util.parsers.fasta
Class ExtractTrainingData
java.lang.Object
util.parsers.fasta.ExtractTrainingData
public class ExtractTrainingData
- extends java.lang.Object
Method Summary |
java.lang.String |
extractFromSequence(int i,
java.lang.String seq)
|
static void |
main(java.lang.String[] args)
|
void |
parseFirstLine(util.parsers.fasta.ExtractTrainingData.AnnotationData data,
java.lang.String s)
|
util.parsers.fasta.ExtractTrainingData.AnnotationData |
readData(java.lang.String fileName)
|
void |
reverse(util.parsers.fasta.ExtractTrainingData.AnnotationData data)
|
void |
writeAcceptors(java.io.BufferedWriter posData,
java.io.BufferedWriter negData,
util.parsers.fasta.ExtractTrainingData.AnnotationData data)
|
void |
writeDonors(java.io.BufferedWriter posData,
java.io.BufferedWriter negData,
util.parsers.fasta.ExtractTrainingData.AnnotationData data)
|
Methods inherited from class java.lang.Object |
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
DATADIRECTORY
public static final java.lang.String DATADIRECTORY
- See Also:
- Constant Field Values
MAX_EXTRACT
public static final int MAX_EXTRACT
- See Also:
- Constant Field Values
PURE_DNA
public static boolean PURE_DNA
ExtractTrainingData
public ExtractTrainingData(java.lang.String dir)
ExtractTrainingData
public ExtractTrainingData(java.lang.String[] args)
main
public static void main(java.lang.String[] args)
reverse
public void reverse(util.parsers.fasta.ExtractTrainingData.AnnotationData data)
writeAcceptors
public void writeAcceptors(java.io.BufferedWriter posData,
java.io.BufferedWriter negData,
util.parsers.fasta.ExtractTrainingData.AnnotationData data)
throws java.io.IOException
- Throws:
java.io.IOException
writeDonors
public void writeDonors(java.io.BufferedWriter posData,
java.io.BufferedWriter negData,
util.parsers.fasta.ExtractTrainingData.AnnotationData data)
throws java.io.IOException
- Throws:
java.io.IOException
extractFromSequence
public java.lang.String extractFromSequence(int i,
java.lang.String seq)
readData
public util.parsers.fasta.ExtractTrainingData.AnnotationData readData(java.lang.String fileName)
parseFirstLine
public void parseFirstLine(util.parsers.fasta.ExtractTrainingData.AnnotationData data,
java.lang.String s)