Uses of Package
startup

Packages that use startup
classifier   
main   
startup   
startup.cluster   
startup.gui   
util   
util.featureSelection   
util.io   
 

Classes in startup used by classifier
ClassificationAction
          This class represents the dataflow that is necessary to either build a classification model for a certain functional site, or evaluate a sequence for said functional site.
ClassificationAction.CLASSIFIERS
          Choice of different available classifiers.
 

Classes in startup used by main
FunSiPWorkflow
          This class represents the different actions etc. defined in a single configuration file.
 

Classes in startup used by startup
ClassificationAction
          This class represents the dataflow that is necessary to either build a classification model for a certain functional site, or evaluate a sequence for said functional site.
ClassificationAction.CLASSIFIERS
          Choice of different available classifiers.
ClassificationAction.COMMAND
          The different dataflow/workflow commands.
ClassificationAction.FILE_TYPE
          Possible filetypes which can be used when evaluating sequence files.
ClassificationAction.STRAND
          Possible strands which should be evaluated by the classification models.
FunSiPWorkflow
          This class represents the different actions etc. defined in a single configuration file.
FunSiPWorkflow.MULTITHREADING
          The different types of available multithreading: a) NO_MULTITHREADING : no multithreading at all b) SINGLE_PC_MULTITHREADING : launches each different ClassificationAction in a seperate thread, and waits until they're all finished; c) CLUSTER_MULTITHREADING : attempts to launch each ClassificationAction in a seperate job for the cluster (standard qsub-command).
 

Classes in startup used by startup.cluster
ClassificationAction
          This class represents the dataflow that is necessary to either build a classification model for a certain functional site, or evaluate a sequence for said functional site.
FunSiPWorkflow
          This class represents the different actions etc. defined in a single configuration file.
 

Classes in startup used by startup.gui
ClassificationAction
          This class represents the dataflow that is necessary to either build a classification model for a certain functional site, or evaluate a sequence for said functional site.
FunSiPWorkflow
          This class represents the different actions etc. defined in a single configuration file.
 

Classes in startup used by util
ClassificationAction.CLASSIFIERS
          Choice of different available classifiers.
 

Classes in startup used by util.featureSelection
ClassificationAction
          This class represents the dataflow that is necessary to either build a classification model for a certain functional site, or evaluate a sequence for said functional site.
 

Classes in startup used by util.io
ClassificationAction
          This class represents the dataflow that is necessary to either build a classification model for a certain functional site, or evaluate a sequence for said functional site.