Package startup

Class Summary
ClassificationAction This class represents the dataflow that is necessary to either build a classification model for a certain functional site, or evaluate a sequence for said functional site.
FunSiPWorkflow This class represents the different actions etc. defined in a single configuration file.
ParameterFileParser This class is used for loading an parsing the parameterfile for the FunSiP project.
 

Enum Summary
ClassificationAction.CLASSIFIERS Choice of different available classifiers.
ClassificationAction.COMMAND The different dataflow/workflow commands.
ClassificationAction.FILE_TYPE Possible filetypes which can be used when evaluating sequence files.
ClassificationAction.STRAND Possible strands which should be evaluated by the classification models.
FunSiPWorkflow.MULTITHREADING The different types of available multithreading: a) NO_MULTITHREADING : no multithreading at all b) SINGLE_PC_MULTITHREADING : launches each different ClassificationAction in a seperate thread, and waits until they're all finished; c) CLUSTER_MULTITHREADING : attempts to launch each ClassificationAction in a seperate job for the cluster (standard qsub-command).