main
Class FunSiPResultGui

java.lang.Object
  extended by main.FunSiPResultGui

public class FunSiPResultGui
extends java.lang.Object

This class is used for testing purposes of FunSiP only. It is currently only configured for donor/acceptor display of predicted splice sites, and then only with certain file formats. It is just a program that displays all the resulting values of predictions, and also displays the associated gene annotations. This can be used to see whether or not the predictions make sense.

Author:
Michiel Van Bel

Constructor Summary
FunSiPResultGui(java.lang.String fileName, java.lang.String coordsFileName)
          The constructor for the program.
 
Method Summary
static void main(java.lang.String[] args)
          Launches the program
 
Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

FunSiPResultGui

public FunSiPResultGui(java.lang.String fileName,
                       java.lang.String coordsFileName)
The constructor for the program. Creates the framework and calls the necessary fileparsers.

Parameters:
fileName - The name of the file which contains the predictions.
coordsFileName - The name of the file which contains the annoted genes.
Method Detail

main

public static void main(java.lang.String[] args)
Launches the program

Parameters:
args - The commandline parameters.